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mRNA localization, reaction centre biogenesis and thylakoid membrane targeting in cyanobacteria

Mahbub M, Hemm L, Yang Y, Kaur R, Carmen H, Engl C, Huokko T, Riediger M, Watanabe S, Liu LN, Wilde A, Hess WR, Mullineaux CW


Stem cell ageing of the root apical meristem of Arabidopsis thaliana

Wein A, Le Gac AL, Laux T

Mech Ageing Dev. 2020;111313. doi:10.1016 


AutoRELACS: automated generation and analysis of ultra-parallel ChIP-seq.

Arrigoni L, Ferrari F, Weller J, Bella C, Boehnisch U, Manke, T

Sci Rep 2020 Jul 24;10(1):12400. doi: 10.1038/s41598-020-69443-8. 


Gray de Cristoforis A, Ferrari F, Clotman F, Vogel T

Mol Brain. 2020  May 29;13(1):85. doi: 10.1186/s13041-020-00623-3.


Loss of the nuclear Wnt pathway effector TCF7L2 promotes migration and invasion of human colorectal cancer cells.

Wenzel J, Rose K, Haghighi EB, Lamprecht C, Rauen G, Freihen V, Kesselring R, Boerries M, Hecht A.

Oncogene. 2020 Mar 20. doi: 10.1038/s41388-020-1259-7. 



Revealing dynamics of gene expression variability in cell state space.

Grün D.

Nat Methods. 2019 Nov 18. doi: 10.1038/s41592-019-0632-3.


Biocomputational Analyses and Experimental Validation Identify the Regulon Controlled by the Redox-Responsive Transcription Factor RpaB.

Riediger M, Kadowaki T, Nagayama R, Georg J, Hihara Y, Hess WR.

iScience. 2019 Apr 28;15:316-331. doi: 10.1016/j.isci.2019.04.033. 


Genome-wide mapping of DNA-binding sites identifies stemnessrelated genes as directly repressed targets of SNAIL1 in colorectal cancer cells.

Beyes S, Andrieux J, Schrempp M, Aicher D, Wenzel JAntón-García P, Boerries M, Hecht A.

Oncogene. 2019 Aug 7. doi: 10.1038/s41388-019-0905-4.


A human liver cell atlas reveals heterogeneity and epithelial progenitors.

Aizarani N, Saviano A, Sagar, Mailly L, Durand S, Herman JS, Pessaux P, Baumert TF, Grün D.


Mapping microglia states in the human brain through the integration of high-dimensional techniques.

Sankowski R, Böttcher C, Masuda T, Geirsdottir L, Sagar, Sindram E, Seredenina T, Muhs A, Scheiwe C, Shah MJ, Heiland DH, Schnell O, Grün D, Priller J, Prinz M.

Nat Neurosci. 2019

Nature. 2019 Aug;572(7768):199-204. doi: 10.1038/s41586-019-1373-2. 


FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus.

Weise SC, Arumugam G, Villarreal A, Videm P, Heidrich S, Nebel N, Dumit VI, Sananbenesi F, Reimann V, Craske M, Schilling O, Hess WR, Fischer A, Backofen R, Vogel T.

Mol Neurobiol. 2018 Dec 11. doi: 10.1007/s12035-018-1444-7. 


A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways.

Piragyte I, Clapes T, Polyzou A, Klein Geltink RI, Lefkopoulos S, Yin N, Cauchy P, Curtis JD, Klaeylé L, Langa X, Beckmann CCA, Wlodarski MW, Müller P, Van Essen D, Rambold A, Kapp FG, Mione M, Buescher JM, Pearce EL, Polyzos A, Trompouki E.

Nat Commun. 2018 Aug 6;9(1):3090. doi: 10.1038/s41467-018-05311-4.


GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledge.

Costa F, Grün D, Backofen R.

Nat Commun. 2018 Sep 11;9(1):3685. doi: 10.1038/s41467-018-05988-7.


From cyanobacteria and algae to land plants: The RpaB/Ycf27 regulatory network in transition

Riediger M, Hihara Y, Hess, WR.

Perspectives in Phycology, Vol. 5 No. 1 (2018), p. 13 - 25


Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche.

Kapp FG, Perlin JR, Hagedorn EJ, Gansner JM, Schwarz DE, O'Connell LA, Johnson NS, Amemiya C, Fisher DE, Wölfle U, Trompouki E, Niemeyer CM, Driever W, Zon LI.

Nature. 2018 Jun;558(7710):445-448. doi: 10.1038/s41586-018-0213-0. Epub 2018 Jun 13.


Bloody Zebrafish: Novel Methods in Normal and Malignant Hematopoiesis.

de Pater E, Trompouki E.

Front Cell Dev Biol. 2018 Oct 15;6:124. doi: 10.3389/fcell.2018.00124. eCollection 2018.

PMID: 30374440 


FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data.

Herman JS, Sagar, Grün D.

Nat Methods. 2018 May;15(5):379-386. doi: 10.1038/nmeth.4662. Epub 2018 Apr 9.



High-Throughput Single-Cell RNA Sequencing and Data Analysis.

SagarHerman JS, Pospisilik JA, Grün D.

Methods Mol Biol. 2018;1766:257-283. doi: 10.1007/978-1-4939-7768-0_15.



The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973.

Tan X, Hou S, Song K, Georg J, Klähn S, Lu X, Hess WR.

Biotechnol Biofuels. 2018 Aug 4;11:218. doi: 10.1186/s13068-018-1215-8. eCollection 2018.